Index

A

Acid (class in ACID_code_v2) ACID() (ACID_code_v2.Acid method) (in module ACID_code_v2) ACID_code_v2.utils module ACID_HARPS() (ACID_code_v2.Acid method) (in module ACID_code_v2)

alpha (ACID_code_v2.Data attribute) append() (ACID_code_v2.DataList method) auto_window() (in module ACID_code_v2.utils) autocorr_func_1d() (in module ACID_code_v2.utils) autocorr_gw2010() (in module ACID_code_v2.utils) autocorr_new() (in module ACID_code_v2.utils)

B

blaze_correct() (ACID_code_v2.LSD method)

C

c_factor (ACID_code_v2.Data attribute) calc_alpha() (ACID_code_v2.LSD method) calc_cholesky() (ACID_code_v2.LSD static method) calc_deltav() (in module ACID_code_v2) (in module ACID_code_v2.utils) clip_wavelengths() (in module ACID_code_v2.utils) collapse_SNR() (in module ACID_code_v2.utils) combine_spec() (ACID_code_v2.Acid method)

combineprofiles() (ACID_code_v2.Acid static method) config (ACID_code_v2.Data property) Config (class in ACID_code_v2) configure_mp_environ() (in module ACID_code_v2.utils) continue_sampling() (ACID_code_v2.Acid method) (ACID_code_v2.Result method) continuumfit() (ACID_code_v2.Acid method) convert_moves_to_emcee() (in module ACID_code_v2.utils)

D

Data (class in ACID_code_v2) DataList (class in ACID_code_v2) defaults (ACID_code_v2.Config attribute)

deterministic_model() (ACID_code_v2.MCMC method) drop_invalid() (in module ACID_code_v2.utils) drop_NaNs() (ACID_code_v2.LineList static method)

E

errors (ACID_code_v2.Data attribute)

F

findfiles() (in module ACID_code_v2.utils) fit_gaussian() (ACID_code_v2.Profiles method) fit_lorentzian() (ACID_code_v2.Profiles method) fit_voigt() (ACID_code_v2.Profiles method)

flux (ACID_code_v2.Data attribute) flux_to_od() (in module ACID_code_v2.utils) from_dict() (ACID_code_v2.Data method) full_model() (ACID_code_v2.MCMC method) full_run_time (ACID_code_v2.Data attribute)

G

gaussian_func() (ACID_code_v2.Profiles static method) get_mask() (ACID_code_v2.MaskingLines method) get_mcmc_stopping_criterion() (ACID_code_v2.MCMC static method) get_normalisation_coeffs() (in module ACID_code_v2.utils)

get_profiles_time (ACID_code_v2.Data attribute) get_result() (ACID_code_v2.Acid method) get_tqdm_desc() (ACID_code_v2.MCMC static method) get_wave() (ACID_code_v2.LSD method) guess_SNR() (in module ACID_code_v2.utils)

H

hydrogen_lines (ACID_code_v2.Config property)

I

initial_model_inputs (ACID_code_v2.Data attribute) initial_profile (ACID_code_v2.Data attribute) initial_profile_errors (ACID_code_v2.Data attribute)

initial_state (ACID_code_v2.Data attribute) initialisation_time (ACID_code_v2.Data attribute) initiate_data() (ACID_code_v2.Result method) initiate_sampler() (ACID_code_v2.Result method)

L

linelist (ACID_code_v2.Data property) LineList (class in ACID_code_v2) lines (ACID_code_v2.MaskingLines attribute) ll (ACID_code_v2.LineList attribute) load() (ACID_code_v2.Data class method) (ACID_code_v2.DataList class method)

load_result() (ACID_code_v2.Result class method) log_prior() (ACID_code_v2.MCMC method) log_probability() (ACID_code_v2.MCMC method) lorentzian_func() (ACID_code_v2.Profiles static method) LSD (class in ACID_code_v2)

M

mask_invalid() (in module ACID_code_v2.utils) MaskingLines (class in ACID_code_v2) max_steps (ACID_code_v2.Data attribute) MCMC (class in ACID_code_v2)

mcmc_time (ACID_code_v2.Data attribute) model_inputs (ACID_code_v2.Data attribute) module ACID_code_v2.utils

N

nanmask (ACID_code_v2.Data attribute) ndim (ACID_code_v2.Data attribute)

next_pow_2() (in module ACID_code_v2.utils) nsteps (ACID_code_v2.Data attribute) nwalkers (ACID_code_v2.Data attribute)

O

od_to_flux() (in module ACID_code_v2.utils)

P

plot_acf() (ACID_code_v2.Result method) plot_autocorrelation() (ACID_code_v2.Result method) plot_continuum_fit() (ACID_code_v2.Data method) plot_corner() (ACID_code_v2.Result method) plot_fit() (ACID_code_v2.Profiles method) plot_forward_model() (ACID_code_v2.Result method) plot_linelist() (ACID_code_v2.Data method) plot_masking_lines() (ACID_code_v2.Config method)

plot_profiles() (ACID_code_v2.Result method) plot_residual_masking() (ACID_code_v2.Data method) plot_walkers() (ACID_code_v2.Result method) plotting_variables (ACID_code_v2.Data attribute) poly_inputs (ACID_code_v2.Data attribute) process_results() (ACID_code_v2.Result method) profiles (ACID_code_v2.Data attribute) Profiles (class in ACID_code_v2)

R

residual_mask() (ACID_code_v2.Acid method) residual_masks (ACID_code_v2.Data attribute) Result (class in ACID_code_v2) robust_mean() (in module ACID_code_v2.utils)

run_LSD() (ACID_code_v2.LSD method) run_mcmc() (ACID_code_v2.Acid method) run_mcmc_until_converged() (ACID_code_v2.Acid method) run_model_function() (ACID_code_v2.MCMC method)

S

save() (ACID_code_v2.Data method) (ACID_code_v2.DataList method) save_dir (ACID_code_v2.DataList property) save_result() (ACID_code_v2.Result method) set_dict_defaults() (in module ACID_code_v2.utils) set_inputs() (ACID_code_v2.Data method)

set_linelist() (ACID_code_v2.Data method) set_order_range() (ACID_code_v2.DataList method) sn (ACID_code_v2.Data attribute) sn_clip() (ACID_code_v2.LSD method) solve_z() (ACID_code_v2.LSD static method) sort_by_order() (ACID_code_v2.DataList method)

T

telluric_lines (ACID_code_v2.Config property)

to_dict() (ACID_code_v2.Config method) (ACID_code_v2.Data method)

U

update_hipri() (ACID_code_v2.Config method)

update_lowpri() (ACID_code_v2.Config method) upper_envelope() (ACID_code_v2.LSD method)

V

validate_dimensions() (ACID_code_v2.LineList static method) validate_linelist() (ACID_code_v2.LineList static method) validate_lines() (ACID_code_v2.MaskingLines static method)

velocities (ACID_code_v2.Data attribute) verbose (ACID_code_v2.Config property) voigt_func() (ACID_code_v2.Profiles static method)

W

wavelengths (ACID_code_v2.Data attribute)